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About the Hudson River Estuary, its environment, and benthic mapping

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Bibliographies by Subject

Hudson River Estuary Bibliography

Bokuniewicz, H.J. and J.M. Ellsworth, 1986, Sediment budget for the Hudson system, Northeastern Geology, 8(3), 156-164.

Bokuniewicz, H.J. and N.K. Coch, 1986, Some management implications of sedimentation in the Hudson-Raritan estuarine system.

Bromley, A., 1954, The oyster and the brothers Flower, The Conservationist, 8(3), 6-9 (Dec-Jan 53-54).

Chang, S., Steimle, F.W., Reid, R.N., 1992, Association of benthic macrofauna with habitat types and quality in the New York Bight. Marine Ecology Progress Series, v 89 n 2 / 3 237.

Chillrud, S.N., 1996, Transport and Fate of Particle Associated Contaminants in the Hudson River Basin, Ph.D. thesis, Columbia University, 277 pages.

Coch, N. K. and H.J. Bokuniewicz, 1986, Oceanographic and geologic framework of the Hudson system, Northeastern Geology, 8(3), 96-108.

Coch, N.K., 1986, Sediment characteristics and facies distributions in the Hudson system, Northeastern Geology, 8(3), 109-129.

Ellsworth, J.M., 1986, Sources and sinks for fine-grained sediment in the lower Hudson River, Northeastern Geology, 8(3), 141-155.

Feng, H., J. Kirk Cochran, David J. Hirschberg and Robert E. Wilson. 1998, Small-Scale Spatial Variations of Natural Radionuclide and Trace Metal Distributions in Sediments From the Hudson River Estuary, Estuaries 21(2).

Flood, R.D. and H.J. Bokuniewicz, 1986, Bottom morphology in the Hudson River estuary and New York harbor, Northeastern Geology, 8(3), 130-140.

Haley, N., J. Boreman, and M. Bain. 1996. Juvenile Sturgeon Habitat Use in the Hudson River. Section VIII: 36 pp. In: J.R. Waldman, W.C. Nieder, and E.A. Blair (eds.), Final Reports of the Tibor T. Polgar Fellowship Program, 1995. Hudson River Foundation, NY.

Kineke, G.G. and W.R. Geyer, in press, Time variation of suspended sediments in the lower Hudson River estuary, Estuaries

Limno-Tech, Inc., 1995, Model Calibration Report, Hudson River PCB Reassessment Remedial Investigation and Feasibility Study (RI/FS), report to US EPA, Region 2, Alternative Remedial Contracting Strategy for Hazardous Waste Remedial Services, EPA Contract 68-S9-2001.

Robideau, Renee M., 1997, Sedimentation rates in Hudson River marshes as determined by radionuclide dating techniques, Masters Thesis, Rensselaer Polytechnic Institute, Richard Bopp thesis advisor.

Schwab, W.C. et al., 1997, Mapping the Sea Floor Geology Offshore of the New York-New Jersey Metropolitan Area Using Sidescan-Sonar: Preliminary Report, USGS Open File Report 97-61, 3 Sheets.

Stedfast, David A., 1980, Cross sections of the Hudson River Estuary from Troy to New York City, New York, US Geological Survey Water Resources Investigations 80-24.

Strayer, D.L., N.F. Caraco, J.J. Cole, S. Findlay, M.L. Pace, 1999, Transformation of freshwater ecosystems by bivalves, BioScience, 49, 19-27.

Strayer, D.L., L.C. Smith, D.C. Hunter, 1998, Effects of the zebra mussel (Dreissena polyorha) invasion on the macrobenthos of the freshwater tidal Hudson River, Can. J. Zool., 76: 419-425.

Strayer, D.L., J. Powell, P. Ambrose, L.C. Smith, M.L. Pace, D.T. Fischer, 1996, Arrival, spread, and early dynamics of a zebra mussel (Dreissena polymorpha) population in the Hudson River estuary, Can. J. Fish. Aquat.Sci. 53: 1143-1149.

TAMS Consultants, Inc., Phase 2 Investigation: Hudson River PCB Reassessment RI/FS

Udell, H.F., 1962, Oysters - a delicacy from the cradle of the sea, NYS Conservationist, 17(2), 9-11.

Vittor, Barry & Assoc., 1998, Hudson/Raritan Bay Estuary Benthic Community Assessment, submitted to NOAA National Ocean Service, Office of Ocean Resources, Conservation and Assessment.

Williams, B.S., T. Hogan, Z. Zo, 1975, The benthic environment of the Hudson River in the vicinity of Ossining, NY during 1972 and 1973, NY Fish Game Jour., 22(1), 25-31.

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Estuarine and Coastal Research

Auster, P.J., R.S. Lewis, L.C. Wahle, I.C. Babb, and R.J. Malatesta, 1994, The use of side-scan sonar for landscape approaches to habitat mapping, in Workshop Proceeding, Application of Side-scan Sonar and Laser-line Systems in Fisheries Research, special publication 9, Alaska Dept. of Fish & Game, pp. 1-7.

Auster,P.J., C. Michalopoulos, R. Robertson, P.C. Valentine, K. Joy, and V. Cross, 1998, Use of acoustic methods for classification and monitoring of seafloor habitat complexity: description of approaches, in N.W. Munro and J.H.M. Willison (eds), Linking Protected Areas with Working Landscapes, Conserving Biodiversity. Science and Management of Protected Areas Association, Wolfville, Nova Scotia, pp 186-197.

Baker, J., T.S. Unger, P. C. Valentine, 1998, Mapping the Sea Floor and Biological Habitats of the Stellwagen Bank National Marine Sanctuary, Massachusetts Bay AGU fall mtg

Barnhardt, W.A., et al., 1998, Mapping the Gulf of Maine with sidescan sonar: a new bottom-type classification for complex seafloors, Jr. Coastal Research, 14(2), 646-659.

Cahoon, L.B., J.E. Nearhoof, C.L. Tilton, 1999, Sediment grain size effect on benthic microalgal biomass in shallow aquatic ecosystems, Estuaries, 22, 735-741

Collins, W.T. and J.L. Galloway, 1998, Seabed classification with multibeam bathymetry, Sea Technology, 39 (9), 45-49.

Cronin, T., S. Colman, D. Willard, R. Kerhin, C. Holmes, A. Karlsen, S. Ishman, and J. Bratton, 1999, Interdisciplinary environmental project probes Chesapeake Bay down to the core, EOS, pp. 237-

Cutter, G.R., Jr., R.J. Diaz, C.H. Hobbs, III, 1999, Benthic habitats and biological resources off the Virginia coast 1996 and 1997, Report to the Minerals Management Service under Cooperative Agreement 14-35-0001-3087, from web site www.vins.edu/-cutter/vabeach/vbtext.html.

Dartnell, P. and J.V. Gardner, 1999, Sea-floor images and data from multibeam surveys in San Francisco Bay, Southern California, Hawaii, the Gulf of Mexico, and Lake Tahoe, California-Nevada, USGS Digital Data Series DDS-55, CD-ROM.

Dellapenna, T.M., S.A. Kuehl, L.C. Schaffner, 1998, Sea-bed mixing and particle residence times in biologically and physically dominated estuarine systems: a comparison of lower Chesapeake Bay and the York River subestuary, Estuarine, Coastal and Shelf Science, 46, 777-795.

Haeni, F.P., 1986, Application of continuous seismic reflection profiling methods to hydrologic studies, Ground Water, 24: 23-31.

Knebel, H.J. and R.C. Circe, 1995, Seafloor environments within the Boston Harbor - Massachustts Bay sedimentary system: a regional synthesis, Jr. of Coastal Research, 11 (1), 230-251.

Knebel, H.J., R.R. Rendigs, J.H. List, R.P. Signell, 1996, Seafloor environments in Cape Cod Bay, a large coastal embayment, Marine Geology, 133, 11-33.

Lambert, D.N., D.J. Walter, D.C. Young, S.R. Griffin, K.C. Benjamin, 1999, Acoustic sediment classification developments constant beamwidth transducers in optimal bottom scanning configuration on redesigned towbody with enhanced signal processing/operating system yields quantum improvements, Sea Technology, 40(9), 35-41.

Lewis, R.S. and J.r. Stone, 1991, Late Quaternary stratigraphy and depositional history of the Long Island Sound Basin: Connecticut and New York: in Journal of Coastal Research - Quaternary Geology of Long Island Sound and Adjacent Coastal Areas, P.T. Gayes, R.S. Lewis, H.J. Bokuniewicz (eds.), Special Issue no. 11, Coastal Education and Research foundation, Inc., Fort Lauderdale, FL, pp. 1-23.

Malinverno, A. M.H. Edwards, W.B.F. Ryan, 1990, Processing of SeaMarc swath sonar data, IEEE Journal of Oceanic Engineering, 15(1), 14-23.

Milligan, T.G., D. Belliveau, and G.R. Morton, 1998, New equipment for benthic habitat studies 1, Sea Technology, 39 (9), 56-61.

Murphy, L., T. Leary, A. Williamson, Standardizing seabed classification techniques, Sea Technology.

NOAA, 1997, Review of sediment quality investigations in San Francisco Bay, NOAA Technical Memorandum NOS ORCA 116, Seattle: National Oceanic and Atmospheric Administration, Hazardous Materials Response and Assessment Division, 59 p. + appendices.

Olsen, C.R., I.L. Larsen, P.J. Mulholland, K.L. Von Damm, J.M. Grebmeier, L/C. Schaffner, R.J. Diaz, M.N. Nichols, 1993, The concept of an equilibrium surface applied to particle sources and contaminant distributions in estuarine sediments, Estuaries, 16, 683-696.

Poppe, L.J., R.S. Lewis, and A.M. Moffett, 1992, Texture of surficial sediments in northeastern Long Island Sound, US Geol. Survey Open-file Report 92-550, 13 pp.

Poppe, L.J., R.S. Lewis, and A.M. Moffett, 1993, Texture of the surficial sediments in Fishers Island Sound, US Geol. Survey, Open-File Report 93-214, 28 pp.

Poppe, L.J., R.S. Lewis, R.N. Zajac, D.C. Twichell, E.A. Schmuck, K.F. Parolski, and M.L. DiGiacomo-Cohen, 1997, Sidescan sonar image, surficial geologic interpretation, and bathymetry of the Long Island Sound Sea Floor off Hammonasset Beach State Park, Connecticut: US Geol. Survey Geological Investigations Map I-2588, 2 sheets.

L.J. Poppe (lpoppe@usgs.gov), Chris Polloni, H.J. Knebel, R.P. Signell, M.R. ten Brink, 1999, LONG ISLAND SOUND ENVIRONMENTAL STUDIES CD-ROM

Reynolds, R.J. and J.H. Williams, 1988, Continuous seismic-reflection profiling of glacial drift along the Susquehanna, Chemung, and Chenango Rivers, south-central New York and north-central Pennsylvania, in A.D. Randall and A.I. Johnson (eds.), Regional aquifer systems of the United States - the northeast glacial aquifers, American Water Resources Assoc. Monograph Series 11, 156p.

Rukavina, N.A. and S. Caddell, 1997, Applications of an acoustic sea-bed classification system to freshwater environmental research and remediation in Canada, paper presented at Fourth Thematic Conference on Remote Sensing for Marine and Coastal Environments, Orlando, Florida.

Ryther, J.H. Jr., S.G. Harris, and C.F. Wright, 1998, New York Catskill reservoir surveys, Sea Technology, 39 (5), 23-29.

Schaffner, L.C., R.J. Diaz, R.J. Byrne, 1987, Processes affecting recent estuarine stratigraphy, in Kraus, N.C. (ed) Coastal Sediment 87, Proceedings o a Specialty Conference on Advances in Understanding of coastal Sediment Processes. Vol 1, American Society of Civil Engineers, New York, 584-599.

Schaffner, L.C., R.J. Diaz, C.R. Olsen, I.L. Larsen, 1987, Faunal Characteristics and sediment accumulation processes in the James River Estuary, Virginia, Estuarine, Coastal and Shelf Science, 25, 211-226.

Schaffner, L.C., P.Jonsson, R.J. Diaz, R. Rosenberg, P. Gapcynski, 1992, Benthic communities and bioturbation history of estuarine and coastal systems: effects of hypoxia and anoxia, Science of the Total Environment, Supplement 1992, Elsevier Science Publishers, pp. 1001-1016.

Tucci, P., F.P. Haeni, and Z.C. Bailey, 1991, Delineation of subsurface stratigraphy and structures by a single channel, continuous seismic-reflection survey along the Clinch River, near Oak Ridge, Tennessee, US Geol. Survey Water Resources Investigations Report 91-4023, 27 pp.

Twichell, D.C., R.N. Zajac, L.J. Poppe, R.S. Lewis, V. Cross, D. Nichols, M.L. DiGiacomo-Cohen, 1997, Sidescan sonar image, surficial geologic interpretation, and bathymetry of the Long Island Sound Sea Floor Off Norwalk, Connecticut: US Geol. Survey Geological Investigations Map I-2589, 2 sheets.

Yang, Z.S. et al., 1998, Yellow River's water and sediment discharge decreasing steadily, EOS, vol 79 (48), p.589 & 592.

Valentine, P.C., J.L. Baker, T.S. Unger, C. Polloni, 1998, Sea floor topographic contour maps and perspective-view imagery of quadrangles 1-18, Stellwagen Bank National Marine Sanctuary of Boston, Massachusetts, U.S. Geological Survey Open-File Report 98-138, CD-ROM.

Valentine, P.C., 1998, Sea floor topographic, backscatter, and interpretive maps and bottom photos of the Massachusetts Bay disposal site region off Boston, Massachusetts, U.S. Geological Survey Open-File Report 98-344, CD-ROM.

Weisberg, S.B., J. A. Ranasinghe, D.M. Dauer, L.C. Schaffner, R.J. Diaz, J.B. Frithsen, 1997, An estuarine benthic index of biotic integrity (B-IBI) for Chesapeake Bay, Estuaries, 20, 149-158.

Wright, L.D. et al., 1987, Spatial variability of bottom types in the Lower Chesapeake Bay and adjoining estuaries and inner shelf. Estuarine, Coastal and Shelf Science 24, 765-784.

Wright,L.D., L.C. Schaffner, J.P.Y. Maa, 1997, Biological mediation of bottom boundary layer processes and sediment suspension in the lower Chesapeake Bay, Marine Geology, 141, 27-50.

Yozzo et al., 1999, Beneficial Uses of Dredged Material for Habitat Creation, Enhancement, and Restoration in NY/NJ Harbor.

Zajac, R.N., 1996, The benthoscape ecology of Long Island Sound: A framework for research, assessment, and management, Final Report for Grant CWF-221-R Long Island Sound Research Fund, Office of Long Island Sound Programs, Dept. of Environmental Protection, State of Connecticut.

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Benthic Habitat Studies

Auster, P.J. and R. W. Langton, 1999, The effects of fishing on fish habitat, American Fisheries Society Symposium 22

Auster, P.J. and R. J. Malatesta, 1995, Assessing the role of non-extractive reserves for enhancing harvested populations in temperate and boreal marine systems, in N. Shackell and J.H.M. Willison (eds) Marine Protected Areas and Sustainable Fisheries. Science and Management of Protected Areas Association, Wolfville, Nova Scotia.

Auster, P.J., R.J. Malatesta, S.C. LaRosa, ,Patterns of microhabitat utilization by mobile megafauna on the southern New England contnental shelf and slope, Marine Ecology Progress Series.

Auster, P.J., C. Michalopoulos, P.C. Valentine, and R.J. Malatesta, 1998, Delineating and monitoring habitat management units in a temperate deep-water marine protected area. in N.W. Munro and J.H.M. Willison (eds), Linking Protected Areas with Working Landscapes, Conserving Biodiversity. Science and Management of Protected Areas Association, Wolfville, Nova Scotia, pp 169-185.

Auster, P.J., C. Michalopoulos, R. Robertson III, P.C. Valentine, K. Joy, V. Cross, 1998, Use of acoustic methods for classification and monitoring of seafloor habitat complexity: description of approaches. in N.W. Munro and J.H.M. Willison (eds), Linking Protected Areas with Working Landscapes, Conserving Biodiversity. Science and Management of Protected Areas Association, Wolfville, Nova Scotia, pp 169-185.

Bain, M.B., and J.L. Bain. 1982. Habitat suitability index models: coastal stocks of striped bass. U.S. Fish and Wildlife Service Biological Services Program FWS/OBS-82/10.1. 29 pp.

Carter, J. L. , Fend, S. V., Kennelly, S. S.,1996, The relationships among three habitat scales and stream benthic invertebrate community structure. Freshwater Biology. v 35 n 1, 109.

Chang, S., Steimle, F.W., Reid, R.N.,1992, Association of benthic macrofauna with habitat types and quality in the New York Bight. Marine Ecology Progress series, v 89 n 2 / 3 237.

Dahl, J., Greenberg, L.A.,1997, Effects of fish predation and habitat type on stream benthic communities. Hydrobiologia. v 361, 67 .

Death, R. G.,1996, The effect of habitat stability on benthic invertebrate communities: the utility of species abundance distributions. Hydrobiologia. v 317 n 2, 97

Diehl, Sebastian,1992, Fish predation and benthic community structure: the role of omnivory and habitat complexity, Ecology. v 73 n 5,1646.

Greenberg, L.A.,1991, Habitat use and feeding behavior of thirteen species of benthic stream fishes, Environmental Biology of Fishes, 1991 v 31 n 4, 389.

Haley, N., J. Boreman, and M. Bain. 1996. Juvenile Sturgeon Habitat Use in the Hudson River. Section VIII: 36 pp. In: J.R. Waldman, W.C. Nieder, and E.A. Blair (eds.), Final Reports of the Tibor T. Polgar Fellowship Program, 1995. Hudson River Foundation, NY.

Hall, S.J., 1994, Physical disturbance and marine benthic communities: life in unconsolidated sediments, in A.D. Ansell, R.N. Gibson, M. Barnes (eds.) Oceanography and Marine Biology: an Annual Review, 32, 179-239.

Jacobi, C.M., Langevin, R., 1996, Habitat geometry on benthic substrata: effects on arrival and settlement of mobile epifauna. Journal of Experimental Marine Biology and Ecolo, v 206 n 1 / 2, 39

Langton, R.W., P.J. Auster, D.C. Schneider, ,A spatial and temporal perspective on research and management of groundfish in the northwest Atlantic, Reviews in Fisheries Science

Leftwich, K.N., Angermeier, P.L., Dolloff, C.A., 1997, Factors Influencing Behavior and Transferability of Habitat Models for a Benthic Stream Fish. Transactions of the American Fisheries Society v 126 n 5, 725.

Lindholm, J.B., P.J. Auster, L.S. Kaufman, submitted 1998, Habitat-mediated survivorship of juvenile ()-year) Atlantic cod (Gradus morhua), Marine Ecology Progress Series.

Lindholm, J., M. Ruth, L. Kaufman, and P. Auster, 1998, A modeling approach to the design of marine refugia for fishery management, in N.W. Munro and J.H.M. Willison (eds), Linking Protected Areas with Working Landscapes, Conserving Biodiversity. Science and Management of Protected Areas Association, Wolfville, Nova Scotia, pp 138-150.

Mid-Atlantic Fishery Management Council & the Atlantic States Marine Fisheries Commission, 1998, Amendment 12 to the Summer Flounder, Scup, and Black Sea Bass Fishery Management Plan

Pardue, G.B. 1983. Habitat suitability index models: alewife and blueback herring. U.S. Fish and Wildlife Service Biological Services Program FWS/OBS-82/10.58. 22 pp.

Rhoads and Germano, 1982, Characterization of organism-sediment relations using sediment profile imaging: an efficient method of remote ecological monitoing of the sefloor (Remots System)Mar Ecol Prog Ser 8:113-128.

Rhoads, D.C. and J.C. Germano, 1986, Interpreting long-term changes in benthic community structure: a new protocol. Hydrobiologica 142: 110-114.

Rhoads and Germano, 1990, Geotechnical Engineering of Ocean Waste Disposal, ASTM Symposium (Demass and Chaney, eds.) vol. 1:50-64

Rizzo, W.M., S.K. Dailey, G.J. Lackey, R.R. Christian, B.E. Berry and R.L. Wetzel. 1996. A metabolism-based trophic index for comparing the ecological values of shallow-water sediment habitats. Estuaries 19: 247-256.

Robson, B.J. and Barmuta, L. A., 1998, The effect of two scales of habitat architecture on benthic grazing in a river. Freshwater Biology. V. 39 n 2, 207

Snelgrove, P.V.R. and C.A. Butman, 1994, Animal-sediment relationships revisited: cause versus effect, in A.D. Ansell, R.N. Gibson, M. Barnes (eds.), Oceanography and Marine Biology: an Annual Review, 32, 111-177.

Soniat, T.M., and M.S. Brody. 1988. Field validation of a habitat suitability index model for the American oyster. Estuaries 11(2): 87-95.

Stephan, C.D. et al., 1998, Essential Fish Habitat: issues for consideration by the Atlantic States Marine Fisheries Commission

Stier, D.J., and J.H. Crance. 1985. Habitat suitability index models and instream flow suitability curves: American shad. U.S. Fish and Wildlife Service Biological Services Program 82(10.88). 34 pp.

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